First, this could merely be a timing issue. Those syslog messages were logged at ~11:30p last night… when did you disable the interface?
Second, after disabling the interface, nothing actually happens until hit the "Apply Changes" button. Was this done? If so, when? If not, that would explain why things are not behaving as you would expect.
Third, What interface are those firewall rules on? Also, when were they disabled? Same question here.... after disabling the rules, did you hit the "Apply Changes" button? If so, when? If not, that would explain why things are not behaving as you would expect.
2. I didn't understand:
IF I disable the WAN-firewall rule for the server, server and client shouldn't be able to make contact, so why the VPN-tunnel shows as up in the dashboard, and why does the firewall also report traffic between server and client? I specifically ask because my goal is to have Synology servers sync/backup to eachother via VPN, but I want to add a time schedule to the firewall, disabling the open WAN port firewall rule most of the time. And hence I noticed when the rule is disabled, the tunnel stays up and traffic keeps on going.
There are still some unknowns here so it's hard to offer help when we only have 70% of the info, but these questions depend on what rule(s) we're talking about, on what interface and what your objective is. Also, are we talking about PFsense boxes being the VPN server and VPN client? Or are we talking about a server on your network making an outbound client connection? There are different answers depending on what you're doing. Post a network map, showing your topology and explain what you're trying to accomplish, so we can offer targeted advice.
3. About that OPT6, would you know:
a. Why the tunnel didn't work without adding the OPT6 interface (found it somewhere on Google I had to do this - it didn't work without that interface, honestly).
b. Why the firewall log reports traffic passing on OPT6 (previous pic) when that interface isn't even enabled (previous pic), and so it isn't even possible to add firewall rules for OPT6?
a. This goes to my previous point, what is the setup and what are you trying to accomplish? Is this a site to site tunnel between two PFsense boxes or a tunnel to 3rd party VPN provider? Depending on what the objective is, assigning a tunnel to an interface is necessary to create a gateway for use with policy based routing
b. Depends on answers to previous questions.