I honestly don't think the Snort package is at issue here. If it was, then I would expect many complaints here of similar nature. My personal experience is that you do generally want to avoid the period around midnight U.S. Eastern Time. I would frequently encounter errors then on the nightly downloads. I moved the update time to 0130 Eastern and no more issues. I suspected the VRT folks had some kind of server maintenance task running at midnight, but that was just a guess.
Since you have problems even with manual downloads, I would look at other basic connectivity problems somewhere. Is there anything else in the chain like a proxy (Squid perhaps?), another upstream firewall, etc.?
Bill