Packages and Compact Flash
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I did some research but I'm not quite sure about the answer to this.
If I use a CF image instead of installing to a HDD from the live CD can I still install packages?
I'll be using the 4GB image.
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Yes.
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Some of them are disabled and some are available but don't work right. You should verify that the ones you want are working under pfSense NanoBSD.
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However, you can do a full install onto CF, which is what the OP asked about. There are just things to be aware of, all of which can be easily found by searching the forum.