With the recent upgrades of pfSense, the default network topology changed from net30 to subnet. If your main site changed to subnet after an upgrade and all of the other sites, clients, etc. stayed on net30, you would likely have issues.
I would see what the topology is set to on the other networks, i.e. net30, subnet, p2p, then adjust the main site to match and see if that corrects the issue.
As a side-note, you can check the OpenVPN logs on the main router by going to Status -> System Logs -> OpenVPN.