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Is it booting uefi? You could be hitting this: https://redmine.pfsense.org/issues/15083
Though I'd expect it to still boot wit the just the first disk present if so.
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@stephenw10 few captures below.
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Hmm, the 2nd shot there is with the primary drive I assume?
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@stephenw10 actually its mixed up...maybe 1 of those were taken when the bios is set to RAID sir
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Ah probably need to see exactly how it's failing in each situation then. But since you are booting EFI t probably will need the manual workaround listed in that bug.
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@stephenw10 i was able to duplicate the bug
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Yup so it can't mount the efi partition on the secondary. Try running the workaround shown on the bug report to populate it.
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@stephenw10 does this mean disabling the EFI boot in bios should sove this issue as well?
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Yes if you boot legacy that does not hit that bug.
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@stephenw10 thank you very much on this...issue solved.