Sorry, question is irrelevant now. After some careful thinking, i realized that this will be impossible.
At first, i thought i will need to make CRLs from endpoint service CA, which i installed specifically for IPSec certificates publishing, available from WAN for checking, which i can do.
But i realized, that in case of strict check, StrongSwan will require all CRLs available - from root and intermediate CAs too. Those i don`t want to publish to WAN.