"Jumbo Frames configured on all switches, and devices."
So your phones (wired and or wifi) and other wifi devices are doing jumbo frames? What about your TV or your DVR? What about your thermostat or your toaster?
While jumbo frames might be of some use on a SAN, or other layer 2 where traffic is not routed and takes advantage of the large MTU say vmotion or FCoE and the already mentioned iSCSI. Other than that I am with SoulChild on it being pretty pointless on the rest of your network.
Your printers support jumbo do they?
Have you actually benchmarked your applications using a standard mtu of 1500 and with jumbo. Many applications are never sending full data packets anyway. Lots of little packets on the wire, where jumbo doesn't do anything.
To your trunking traffic to a lagg. So hairpin, and you do understand that when 2 devices talk they are going to use only 1 connection in the lag. So a hairpin that /2 the bandwidth the available bandwidth on the physical interface for that conversation. So you think your jumbo is any real value here for moving large amounts of data?
Lagg, Port channel, etherchannel, etc. what ever you want to call it 1gig + 1gig does not = 2gig. It equals 2 1gig connections.
If you your looking for performance for intervlan traffic I sure wouldn't trunk the connection. You should put each vlan on its own uplink so that you don't hairpin. This prob going to give you way more bang for the buck then any jumbo frames.
If you need more than 1 gig, then have a bigger uplink. 10gig for example. Lagg to be honest is nice for mitigation of failed port or switch you set it up correctly. But as to giving you a fatter pipe not so much. And then you just hairpin anyway? Trunking and putting more than 1 vlan on the same connection is ok when the vlans on that connection don't want to talk to each other and only talk to other vlans on other uplinks, etc. But when devices going through the same uplink to where they can be routed to the other vlan on the same uplink you just /2 your possible bandwidth because of the hairpin.