Thanks. That might have something to do with it. I think the log entries that refer to the number of entries added/deleted refer to the alias files? Even if the permit file is deleted upon saving the config, it wasn't clear to me that the corresponding entries would be removed from the alias file until the force update was run. Therefore I would have expected the log nevertheless to show the number of entries being deleted.
I've excerpted the relevant log entries below. In this example, I disabled Switzerland and enabled Japan in one step, saved, then ran force update. You can see that there is no reference to deleted entries, and the "last updated list summary" still refers to Switzerland (though it's been properly removed from the other sections).
Thanks.
**Saving configuration [ 05/12/17 10:13:15 ] ...
[ Removing List(s) : InboundPermCH ]
Archiving Aliastable folder
Archiving selected pfBlockerNG files.
**Saving configuration [ 05/12/17 10:15:38 ] ...
UPDATE PROCESS START [ 05/12/17 10:15:55 ]
...
===[ IPv4 Process ]=================================================
...
[ InboundPermGB ] Reload [ 05/12/17 10:18:32 ] . completed ..
[ InboundPermJP ] Downloading update [ 05/12/17 10:18:35 ] .. completed ..
...
===[ Aliastables / Rules ]==========================================
No changes to Firewall rules, skipping Filter Reload
...
Updating: pfB_iBlockList
64 addresses added.11 addresses deleted.
Updating: pfB_Inbound_permit
4583 addresses added.
Archiving Aliastable folder
Archiving selected pfBlockerNG files.
===[ FINAL Processing ]=====================================
[ Original IP count ] [ 490720 ]
[ Final IP Count ] [ 432383 ]
===[ Permit List IP Counts ]=========================
22599 total
18016 /var/db/pfblockerng/permit/InboundPermGB.txt
4583 /var/db/pfblockerng/permit/InboundPermJP.txt
...
====================[ Last Updated List Summary ]==============
...
May 12 00:17 InboundPermGB
May 12 00:17 InboundPermCH
May 12 10:18 InboundPermJP
===============================================================
..
Alias table IP Counts
-----------------------------
545732 total
...
22599 /var/db/aliastables/pfB_Inbound_permit.txt
...
UPDATE PROCESS ENDED [ 05/12/17 10:20:18 ]