I see, my intention was to run everything on that box (a firewall, gateway and seedbox) and my idea was to catch all the traffic from the seedbox using an alias IP and then set it to go to the P2P traffic shaping queue but the filter can't catch the traffic going out the WAN on the box itself, wether its an alias IP or the real lan IP, just any upload or traffic going out the WAN iface initiated from the pfsense box itself is bypassing the traffic shaper according to my tests.
It does works with incoming traffic, i can see the incoming packets to the alias IP being caught and queued into the P2P queue, but unfortunately it seems it doesn't work the other way for outgoing packets. So, i guess i'll have to think on doing this in some other way, perhaps deploying pfsense using vmware ESX or some other virtualization technology so i'd run pfsense + a separate OS on the same box to get the seedbox traffic shaped.
Thanks again for clearing up this :)