I did at one point have the same fqdn in 2 aliases, however after removing one instance of the duplicate it didn't help.
The one thing I'm doing that maybe it doesn't like is have 2 fqdn's that may at times equate to the same IP.
I did see a post about the multiple FQDNs and I tried the adding individual aliases, and then one alias that referenced the other aliases and after a restart my tables looked better and had correct IPs, but I ran into another issue where it was now blocking my connections for some reason. And I had multiple rules, one for the combined alias, and another similar (different port forward) for one of the single alias items, and still another one another of the single aliases for another port and none of them were working.
These were rules that were working a day before and the only change was the source address alias used.
I may try the upgrade to 2.4.5 when I get a chance, but i'll have to see what's involved.